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![]() ** libs x86_64-apple-darwin13.4.0-clang -I"/opt/anaconda3/lib/R/include" -DNDEBUG -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/opt/anaconda3/include -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -I/opt/anaconda3/include -fdebug-prefix-map=/opt/concourse/worker/volumes/live/59b7f007-fada-42cf-7435-5bbd0518eaa4/volume/r-base_1570124919999/work=/usr/local/src/conda/r-base-3.6.1 ** package ‘lattice’ successfully unpacked and MD5 sums checked Trying URL '' Content type 'application/x-gzip' length 3058840 bytes (2.9 MB) Trying URL '' Content type 'application/x-gzip' length 686855 bytes (670 KB) Trying URL '' Content type 'application/x-gzip' length 515201 bytes (503 KB) Trying URL '' Content type 'application/x-gzip' length 1202446 bytes (1.1 MB) Trying URL '' Content type 'application/x-gzip' length 506246 bytes (494 KB) Trying URL '' Content type 'application/x-gzip' length 2010708 bytes (1.9 MB) Trying URL '' Content type 'application/x-gzip' length 782608 bytes (764 KB) Trying URL '' Content type 'application/x-gzip' length 861727 bytes (841 KB) Trying URL '' Content type 'application/x-gzip' length 1100197 bytes (1.0 MB) Trying URL '' Content type 'application/x-gzip' length 8066 bytes Trying URL '' Content type 'application/x-gzip' length 182653 bytes (178 KB) Trying URL '' Content type 'application/x-gzip' length 83389 bytes (81 KB) Trying URL '' Content type 'application/x-gzip' length 1281864 bytes (1.2 MB) Trying URL '' Content type 'application/x-gzip' length 2049932 bytes (2.0 MB) Trying URL '' Content type 'application/x-gzip' length 805569 bytes (786 KB) Trying URL '' Content type 'application/x-gzip' length 2193384 bytes (2.1 MB) Trying URL '' Content type 'application/x-gzip' length 399257 bytes (389 KB) This is what appeared on my console: > install.packages("ggplot2") also installing the dependencies ‘lattice’, ‘colorspace’, ‘nlme’, ‘Matrix’, ‘farver’, ‘lifecycle’, ‘munsell’, ‘ellipsis’, ‘pillar’, ‘rlang’, ‘vctrs’, ‘isoband’, ‘MASS’, ‘mgcv’, ‘scales’, ‘tibble’ ![]() So I reinstalled the packages and it turned out that I could not install. I called the library and it said that there is no library. However, after a while R was crashed and forced to reopen. ![]() I also checked BiocManager::valid() and everything seems to be OK (TRUE).I just start learning R and yesterday I tried to install some basic packages (tidyverse, ggplot2, dplyr, broom, ggpubr) in trying to run a linear regression model.Īt the first attempted it worked and I could installed and called all the library from the packages. Loaded via a namespace (and not attached): ![]() stats graphics grDevices utils datasets methods base LC_MONETARY=English_United States.utf8 LC_NUMERIC=C LC_COLLATE=English_United States.utf8 LC_CTYPE=English_United States.utf8 Running under: Windows 10 圆4 (build 18363) ![]() Installation of package ‘38.knownGene’ had non-zero exit statusĪnd here is the sessionInfo(): R version 4.2.0 ( ucrt) ‘C:\Users\AppData\Local\Temp\RtmpKWfcYV\downloaded_packages’ Installing the source package ‘38.knownGene’Ĭontent type 'application/x-gzip' length 44812729 bytes (42.7 MB) Here is the error message again: Bioconductor version 3.15 (BiocManager 1.30.17), R 4.2.0 ( ucrt) GetOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details replacement repositories: CRAN: Bioconductor version 3.15 (BiocManager 1.30.17), R 4.2.0 ( ucrt) Installing package(s) '38.knownGene' installing the source package ‘38.knownGene’ trying URL ' ' Content type 'application/x-gzip' length 44812729 bytes (42.7 MB) downloaded 42.7 MB The downloaded source packages are in ‘C:\Users\AppData\Local\Temp\RtmpsPAYMJ\downloaded_packages’ Warning message: In install.packages(.) : installation of package ‘38.knownGene’ had non-zero exit status Any ideas how I can install the package? Thanks!īiocManager::install("38.knownGene") Unfortunately, the error message is not so helpful. I'm trying to install 38.knownGene package but I fail. ![]()
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